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Tests, Required Specimens & Our Diagnostic Record

Data is current to 31st August, 2001

Disease Index: A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

This page contains a list of the disorders tested in our laboratory. The list is focussed on lysosomal and peroxisomal disorders but also includes other genetic disorders for which there are reliable biochemical test protocols existing in the laboratory.

This page can be navigated in various ways. You can search our Alphabetical disease index (above) for links to tests for a specific disorder, jump using the Disease group index, or search by disease name, enzyme name or any other text word using the Netscape Find button.

The disease names are also cross referenced to OnLine Mendelian Inheritance in Man (OMIM). Click a disorder to find out the latest information.

Enzyme analyses are performed weekly and most mutation analyses are performed within 10 days. The turn-around time for prenatal diagnoses depends on the approach (direct analysis or cell culture) but every effort is made to provide the speediest result for the patient.

Alphabetical disease index

Disease group index

Neurolipidoses
Mucopolysaccharidoses
Peroxisomal disorders
Glycogen storage disorders
Oligosaccharidoses
Organic and amino acidurias
Miscellaneous


NEUROLIPIDOSES

Neurolipidoses Screen (or White Cell/Lysosomal Enzymes): Our laboratory offers a first-tier screen for lysosomal storage disorders using 14 lysosomal enzymes (cost). The screen requires 10mL EDTA blood or the corresponding leucocytes but can also be performed on cultured cells (preparation costs). The enzyme assays included are:

Disorder/Enzyme deficiency Specimen requirements Postnatal
diagnoses
Prenatal
diagnoses
GM1 gangliosidosis EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 26 25 (6 affected)
GM2 gangliosidosis, Type I (Tay-Sachs disease)
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 35 42 (5 affected)
GM2 gangliosidosis, Type 2 (Sandhoff disease)
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 12 13 (1 affected)
Metachromatic leucodystrophy
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 64 38 (12 affected)
Multiple sulphatase deficiency
  • Various sulphatases
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 6 2 (None affected)
X-linked ichthyosis
  • Steroid (DHEAS) sulphatase ($)
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 15 5 (1 affected)
Pseudo arylsulphatase deficiency
  • Sulphatidase (Arlysulphatase A) ($)
  • Mutation analysis ($)
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 28 Not required
Fabry disease
  • Trihexosylceramidase (a-galactosidase) ($)
  • Mutation analysis ($)
  • Mutation searching ($)
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 54 3 (None affected)
Krabbe disease EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 31 45 (10 affected)
Niemann-Pick disease
types A and B
EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 20 5 (2 affected)
Niemann-Pick disease
type C
  • Cholesterol esterification ($)
  • Filipin staining ($)
  • Mutation analysis (I1061T mutation) ($)
  • Mutation searching ($)
Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy (prep $) 27 9 (None affected)
Gaucher disease
  • b-glucocerebrosidase ($)
    (included in neurolipidoses screen)
  • Mutation analysis (including the recombinant variants) ($)
  • Chitotriosidase (for monitoring therapy) ($)
  • EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $)
  • Serum (preferred) or plasma required for chitotriosidase
  • 115 27 (5 affected)
    Wolman’s disease and Cholesterol ester storage disease EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy (prep $) 5 4 (1 affected)
    Farber’s disease
    • Ceramidase ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy (prep $) 1 None

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


    MUCOPOLYSACCHARIDOSES (MPS)

    Urine Analysis: Our laboratory protocol is to always analyse the pattern of excretion of mucopolysaccharide molecules in urine by high resolution electrophoresis prior to embarking on enzyme analysis for this group of disorders. A urine specimen should thus always be sent in any situation where a disorder of mucopolysaccharide catabolism is suspected. ($)

    Disorder/Enzyme deficiency Specimen requirements Postnatal
    diagnoses
    Prenatal
    diagnoses
    MPS I (Hurler/Scheie) EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 88 75 (12 affected)
    MPS II (Hunter) EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 62 35 (7 affected)
    MPS III (Sanfilippo) Type A
    • Urine analysis
    • Sulphamidase (glucosamine-N-sulphatase) ($)
    • Mutation analysis (various common) ($)
    • Mutation searching ($)
    EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 56 23 (5 affected)
    MPS III (Sanfilippo) Type B EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 36 16 (2 affected)
    MPS III (Sanfilippo) Type C EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 4 None
    MPS III (Sanfilippo) Type D EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 4 None
    MPS IV (Morquio) Type A EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 46 20 (5 affected)
    MPS IV (Morquio) Type B EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy None None
    MPS VI (Maroteaux-Lamy) EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 33 13 (1 affected)
    MPS VII EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 1 2 (None affected)

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


    PEROXISOMAL DISORDERS

    PEROXISOMAL BIOGENESIS DISORDERS and ISOLATED PEROXISOMAL ß-OXIDATION DEFECTS

    NOTE: Peroxisomal biogenesis and peroxisomal ß-oxidation defects show remarkable overlap in both clinical phenotype and biochemical expression. Consequently, it may be necessary for a range of tests to be performed to reach a diagnosis. The more common names of these peroxisomal disorders are listed below, along with the tests and primary sample requirements

    Disorder/Enzyme deficiency Specimen requirements Postnatal
    diagnoses
    Prenatal
    diagnoses
    X-linked adrenoleucodystrophy
    • Very long chain fatty acids ($)
    • Mutation analysis ($)
    • Mutation searching ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), plasma, tissue (fresh, frozen or fixed), skin biopsy. DNA from any source for mutation or linkage studies 87 46 (12 affected)
    X-linked adrenomyeloneuropathy
    • Very long chain fatty acids ($)
    • Mutation analysis ($)
    • Mutation searching ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), plasma, tissue (fresh, frozen or fixed), skin biopsy. DNA from any source for mutation or linkage studies 24 None
    Refsum's disease (adult onset)
    • Phytanic acid ($)
    • Phytanic acid oxidation ($)
    Plasma/serum, tissue (fresh, frozen or fixed) or EDTA blood (10mL) for phytanic acid analysis.
    Cultured cells or skin biopsy for phytanic acid oxidation studies
    14 None
    Zellweger syndrome
    • Very long chain fatty acids (plasma) ($)
    • Dihydroxyacetonephosphate acyl transferase ($)
    • Cellular catalase distribution ($)
    • Mutation analysis (PEX1) ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), plasma, tissue (fresh, frozen or fixed) or skin biopsy for VLCFA.
    Cultured cells or skin biopsy for DHAP-AT or catalase studies
    22 63 (19 affected)
    Neonatal adrenoleucodystrophy
    • Very long chain fatty acids (plasma) ($)
    • Cellular catalase distribution ($)
    • Mutation analysis (PEX1) ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), plasma, tissue (fresh, frozen or fixed) or skin biopsy for VLCFA analysis.
    Cultured cells or skin biopsy for catalase studies
    9 2 (None affected)
    Infantile Refsum's disease
    • Very long chain fatty acids (plasma) ($)
    • Cellular catalase distribution ($)
    • Mutation analysis (PEX1) ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), plasma, tissue (fresh, frozen or fixed) or skin biopsy for VLCFA analysis.
    Cultured cells or skin biopsy for catalase studies
    15 4 (None affected)
    Rhizomelic chondrodysplasia punctata (RCDP)
    • Phytanic acid (plasma) ($)
    • Dihydroxyacetonephosphate alkyl synthase ($)
    • Phytanic acid oxidation ($)
    • Mutation analysis (PEX7) ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), plasma, tissue (fresh, frozen or fixed) or skin biopsy for VLCFA analysis.
    Cultured cells or skin biopsy for DHAP alkyl synthase studies
    13 6 (1 affected)
    Hyperoxaluria Type I
    • Glyoxalate (aspartate) aminotransferases ($)
    Liver biopsy only 2 None
    ß-oxidation defects EDTA blood (10mL), plasma, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy, frozen or fixed tissue. 2 1 (None affected)

    Other tests available to differentiate various peroxisomal disorders

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


    GLYCOGEN STORAGE DISEASES

    The glycogen storage disorders often cannot be diagnosed reliably using blood or cultured cells. Further, there is significant tissue specificity in the expression of the various enzymes involved with glycogen metabolism. Therefore, tissue that is involved directly with the pathology is often required for enzyme analysis (eg, liver or muscle). Please contact the laboratory for further advice.

    Disorder/Enzyme deficiency Specimen requirements Postnatal
    diagnoses
    Prenatal
    diagnoses
    GSD type Ia (Von Gierke)
    • Glucose-6-phosphatase ($)
    Liver biopsy only 4 None
    GSD II (Pompe)
    • a-1,4-glucosidase ($)
    • Blood spot a-1,4-glucosidase ($)
    Cultured cells, skin biopsy, muscle biopsy/tissue.
    Fresh blood on Guthrie card for blood spot analysis.
    33 46 (16 affected)
    GSD III (Cori)
    • ‘Debrancher enzyme’ ($)
    EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), muscle biopsy/tissue 8 None
    GSD V (McArdle)
    • Muscle Phosphorylase ($)
    Muscle biopsy 5 None
    GSD VI (Hers)
    • Liver Phosphorylase ($)
    Liver biopsy 13 None
    GSD VIII
    • Phosphorylase ‘b’ kinase ($)
    Liver, muscle biopsy 5 None

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


    OLIGOSACCHARIDOSES

    (Disorders of Complex Carbohydrate Metabolism)

    Disorder/Enzyme deficiency Specimen requirements Postnatal
    diagnoses
    Prenatal
    diagnoses
    Mannosidosis EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 10 None
    Fucosidosis EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), fresh frozen tissue, skin biopsy 2
    (+1 feline)
    1 (None affected)
    Mucolipidosis I (Sialidosis)
    • Neuraminidase ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 3 1 (None affected)
    Mucolipidosis II or Mucolipidosis III Plasma, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 23 15 (7 affected)
    Galactosialidosis
    • Neuraminidase ($)
    • ß-galactosidase ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 2 None
    Sialic acid storage disease (Sialuria)
    • Sialic acid ($)
    Urine (frozen) 8 6 (1 affected)
    Aspartylglucosaminuria
    • Aspartamido-ß-acetylglucosaminidase
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 2 None

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


    ORGANIC AND AMINO ACID DISORDERS

    Disorder/Enzyme deficiency Specimen requirements Postnatal
    diagnoses
    Prenatal
    diagnoses
    Cystinosis
    • S35 cystine metabolism ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 27 31 (9 affected)
    Isovaleric acidaemia
    • 2-C14 leucine metabolism ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 2 4 (2 affected)
    Maple syrup urine disease
    • 1-C14 leucine metabolism ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 6 13 (3 affected)
    Canavan disease (aspartylacylase deficiency)
    • Molecular analysis (E285A,Y231X and A305E) ($)
    EDTA blood, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy or any source of DNA for molecular analysis. 2 homozygotes
    3 heterozygotes
    1 (No affected)
    Galactosaemia (Classical form)
    • Galactose-phosphate uridyl transferase (GALT) activity ($)
    • Molecular analysis (Q188R) ($)
    Washed erythrocytes, skin biopsy, cultured cells (skin fibroblasts, chorionic villus or amniotic cells) or any source of DNA for molecular analysis. 16 11 (3 affected)
    Galactosaemia (Duarte variant)
    • Galactose-phosphate uridyl transferase (GALT) activity ($)
    • Molecular analysis (N314D) ($)
    Washed erythrocytes (frozen) or any source of DNA for molecular analysis. 7 None
    Citrullinaemia
    • C14 citrulline metabolism ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 6 13 (2 affected)
    Ornithine transcarbamylase deficiency
    • Ornithine transcarbamylase ($)
    Liver biopsy or tissue (only) 5 1 (1 affected)
    Carbamoyl phosphate synthetase deficiency
    • Carbamoyl phosphate synthetase ($)
    Liver biopsy or tissue (only) 1 None
    Glycerol kinase deficiency
    • Glycerol kinase ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 2 1 (None affected)
    Medium chain Acyl CoA dehydrogenase deficiency
    • Medium chain Acyl CoA dehydrogenase ($)
    • Molecular analysis (K329E) ($)
    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy or any source of DNA for molecular analysis. 5 None

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z


    MISCELLANEOUS DISORDERS

    Disorder/Enzyme deficiency Specimen requirements Postnatal
    diagnoses
    Prenatal
    diagnoses
    Cystic fibrosis
    • Mutation analysis
      DF508, G551D, G542X, R553X, DI506, 621+1G>T, A455E, N1303K, R117H/C, poly-T, 3849+10kbC>T ($)
    • Microvillar enzyme analysis for prenatal diagnosis ($)

    EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy or DNA from any source

    Cell free amniotic fluid (17-18 weeks gestation)

    228 91 (15 affected)
    Smith Lemli Opitz syndrome
    • 7-dehydrocholesterol ($)
    Plasma/serum, EDTA blood (10mL), cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy, amniotic fluid, tissues (frozen or formalin fixed) 11 17 (2 affected)
    Congenital disorders of glycosylation (CDG)
    • Transferrin isoform analysis ($)
    • Phosphomannomutase ($)
    • Phosphomannose isomerase ($)
    • Mutation analysis (PMM2) ($)
    • Mutation searching (PMM2) ($)
    SERUM required for transferrin isoform analysis.
    EDTA blood (10mL), cultured cells, (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy for enzyme assays.
    5 None
    Infantile neuronal ceroid lipofuscinosis (INCL; Infantile Batten's disease)
    • Palmitoyl-protein thioesterase ($)
    • Molecular analysis (R151X) ($)
    Cultured cells (skin fibroblasts, chorionic villus or amniotic cells) or skin biopsy for enzyme analysis.
    Cultured cells, EDTA blood (10mL) or leucocytes for mutation analysis.
    2 0
    Late-infantile neuronal ceroid lipofuscinosis (LINCL; Late-infantile Batten's disease)
    • Tripeptidyl peptidase I ($)
    • CLN2 mutation analysis (R208X, 3556G>C, 3556G>A) ($)
    • CLN2 mutation searching ($)
    EDTA blood (10mL), leucocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy (prep $) 9 None
    Juvenile neuronal ceroid lipofuscinosis (JNCL; Juvenile Batten's disease)
    • CLN3 mutation analysis (1kb deletion) ($)
    • CLN3 mutation searching ($)
    EDTA blood, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy or any source of DNA for molecular analysis. 2 0
    Cerebrotendinous xanthomatosis
    • Bile alcohols ($)
      (note that cholestanol is not usually assayed)
    Urine preferred (random, frozen, no preservative, 10-50mL)
    Plasma/serum
    2 None
    Systemic carnitine deficiency
    • Carnitine ($)
    Plasma/serum None None
    CPT I deficiency
    • Carnitine palmitoyl transferase I ($)
    Muscle, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 2 None
    CPT II deficiency
    • Carnitine palmitoyl transferase II ($)
    Muscle, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 2 None
    Lesch-Nyhan syndrome
    • Hypoxanthine-guanine phosphoribosyl transferase (HGPRT'ase) ($)
    EDTA blood (10mL), washed erythrocytes, cultured cells (skin fibroblasts, chorionic villus or amniotic cells), skin biopsy 3 None

    A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

    This page was last updated 31/8/01